Summary
Overview
Work History
Education
Skills
References
Publications
Complementary Education
Timeline
Generic
Claudia Samantha Perea De La Torre

Claudia Samantha Perea De La Torre

Cali

Summary

Biologist with a Master's degree in Biological Sciences, specializing in bioinformatics and genomics applications in plant breeding. Experienced in applying molecular genetics and advanced data analysis to crop improvement programs. Proficient in R and statistical methods for genomic prediction and sequence variant analysis. Experience with polyploid species and complex genetic data. Strong scientific writing and communication skills and experience collaborating in multidisciplinary research teams.

Overview

17
17
years of professional experience

Work History

Research Associate in the Tropical Forages Breeding Program

International Center of Tropical Agriculture (CIAT)
01.2022 - Current
  • Main bioinformatician in the Tropical Forages Breeding Program
  • Applying molecular genetics and advanced data analysis to forages breeding program
  • Contributed to genomic selection implementation efforts
  • Developed genotyping tools for plant breeding
  • Created reproducible computational workflows to support breeding decisions.

Founder & CEO

Panketo
01.2017 - 01.2022
  • Established and led a specialty food company focused on developing and commercializing artisanal food products for health-conscious consumers

Junior Research in Molecular Microbiology

Global Yeast
01.2016 - 01.2017
  • Molecular Screening of yeast strains for genetic improvement and applications in biofuels industry.

Research Assistant in Cassava Genetics

International Center of Tropical Agriculture (CIAT)
01.2013 - 01.2015
  • Conducted genetic diversity and population structure analyses
  • Performed genome-wide association studies (GWAS) and QTL mapping for agronomically important traits
  • Processed and analyzed GBS and WGS data for cassava germplasm collections
  • Developed genotyping tools for plant breeding
  • Development and implementation of NGS data analysis pipelines
  • Optimized computational tools for variant calling and genotype imputation
  • Implemented reproducible bioinformatics workflows to ensure consistent data processing

Research Assistant in Human Genetics

Universidad Antonio Nariño
01.2011 - 01.2012
  • Department of Neuropsychiatric genetics

Research and teacher assistant

Universidad de Los Andes
01.2008 - 01.2010
  • Human Genetics Lab. Teacher assistant in the courses of molecular biology (theory and practice)

Education

Master in Biological Sciences - Molecular Biology

Universidad de los Andes
01.2011

Bachelor in Biology - undefined

Universidad de los Andes
01.2008

High School - undefined

Liceo Benalcázar
01.2002

Skills

    Technical:

  • Bioinformatics approaches for large-scale breeding applications
  • Genomic prediction and selection models for crop improvement
  • Molecular marker development and implementation in breeding programs
  • Population structure analysis and genetic diversity assessment in plant populations
  • Next-generation sequencing data processing and variant detection
  • Association studies and QTL mapping for agronomic traits
  • Software: R, ASReml, BGLR, GAPIT, TASSEL, GATK, VCFTools, BCFTools, Bowtie2, NGSEP, Structure,etc

    Languages: Spanish (native/mother tongue), English (professional proficiency)

References

  • Rosa, Jauregui, PhD, L.A.Becerra@cgiar.org, +971 507721966, Agriculture For Tomorrow, Chief Scientist, Dubai, United Arab Emirates
  • Luis Augusto, Becerra Lopez-Lavalle, PhD, L.A.Becerra@cgiar.org, +971 507721966, Agriculture For Tomorrow, Chief Scientist, Dubai, United Arab Emirates
  • Maria Claudia, Lattig, PhD, mlattig@uniandes.edu.co, +57 1 3394949 ext. 3230, Los Andes University, Associated Professor
  • Johan, Thevelein, PhD, johan.thevelein@kuleuven.vib.be, +32 16 32 15 07, KU Leuven, head of the VIB Department of Molecular Biology

Publications

  • Perea, C., De La Hoz, J. F., Cruz, D. F., Lobaton, J. D., Izquierdo, P., Quintero, J. C., ... & Duitama, J. (2016). Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP. BMC genomics, 17(5), 539-551.
  • Perea, C. S., Niño, C. L., López-León, S., Gutiérrez, R., Ojeda, D., Arboleda, H., ... & Forero, D. A. (2014). Study of a functional polymorphism in the PER3 gene and diurnal preference in a Colombian sample. The open neurology journal, 8, 7.
  • Ojeda, D. A., Perea, C. S., Suárez, A., Nino, C. L., Gutiérrez, R. M., López-León, S., ... & Forero, D. A. (2014). Common functional polymorphisms in SLC6A4 and COMT genes are associated with circadian phenotypes in a South American sample. Neurological Sciences, 35(1), 41-47.
  • Ojeda, D. A., Perea, C. S., Niño, C. L., Gutiérrez, R. M., López-León, S., Arboleda, H., ... & Forero, D. A. (2013). A novel association of two non-synonymous polymorphisms in PER2 and PER3 genes with specific diurnal preference subscales. Neuroscience letters, 553, 52-56.
  • Perea, C. S., Paternina, A. C., Gomez, Y., & Lattig, M. C. (2012). Negative affectivity moderated by BDNF and stress response. Journal of affective disorders, 136(3), 767-774.

Complementary Education

2023 | VII Genomic Selection in Plant Breeding. A hands on practical course in R.

Universidad Politécnica de Madrid; Madrid, Espana.

May 22 -26 2023

Duration: 35 hours

2023 | Advanced R

CIAT headquarters

May 22 -26 2023

Duration: 70 hours

2018 | Bioinformatics and meta genomics applied to the study

of microbiomes

Universidad del Valle, Facultad de Ciencias Naturales y Exactas

Cali, Colombia.

Duration: 40 hours

2016 | CRISPR/Cas9 Workshop

Katholieke Universiteit Leuven (KU Leuven)

Leuven, Belgium

Duration: 8 hours

2016 | Advance techniques in Molecular Cloning

Katholieke Universiteit Leuven (KU Leuven)

Leuven, Belgium

Duración: 8 hours

2013 | Next Generation Data Analysis Workshop

University of Riverside (UC Riverside), Riverside-CA., U.S.A.

Duration: 40 hours

2012 | Genetics of Complex HumanDiseases

Cold Spring Harbor Laboratory, Lloyd Harbor - N.Y., U.S.A.

Duration: 40 hours

2008 | V Curso Internacional sobre avances y aplicaciones de la biología molecular en salud humana

Universidad Nacional de Colombia. Facultad de Medicina Bogotá, Colombia

Duration: 30 hours

2008 | Diplomado en citogenética

Universidad Nacional de Colombia. Instituto de genética humana, Bogotá, Colombia.

Duration: 40 hours

2008 | VI Course of Human and Medical Genetics

Latin American Human Genetics School (ELAG),

Caxias do Sul, RS, Brazil.

Duration: 30 hours

Timeline

Research Associate in the Tropical Forages Breeding Program

International Center of Tropical Agriculture (CIAT)
01.2022 - Current

Founder & CEO

Panketo
01.2017 - 01.2022

Junior Research in Molecular Microbiology

Global Yeast
01.2016 - 01.2017

Research Assistant in Cassava Genetics

International Center of Tropical Agriculture (CIAT)
01.2013 - 01.2015

Research Assistant in Human Genetics

Universidad Antonio Nariño
01.2011 - 01.2012

Research and teacher assistant

Universidad de Los Andes
01.2008 - 01.2010

Bachelor in Biology - undefined

Universidad de los Andes

High School - undefined

Liceo Benalcázar

Master in Biological Sciences - Molecular Biology

Universidad de los Andes
Claudia Samantha Perea De La Torre